NAME
ncdump - Convert netCDF files to ASCII form (CDL)
SYNOPSIS
- ncdump [-c] [-h] [-v var1,...] [-b lang]
[-f lang] [-l len] [-n name] [-p
f_digits[,d_digits]] file
DESCRIPTION
ncdump generates an ASCII representation
of a specified netCDF file on standard output. The ASCII
representation is in a form called CDL (``network Common Data form
Language'') that can be viewed, edited, or serve as input to
ncgen. ncgen is a companion program that can generate
a binary netCDF file from a CDL file. Hence ncgen and
ncdump can be used as inverses to transform the data
representation between binary and ASCII representations. See
ncgen for a description of CDL and netCDF representations.
ncdump defines a default format used for each type of
netCDF data, but this can be changed if a `C_format' attribute is
defined for a netCDF variable. In this case, ncdump will use
the `C_format' attribute to format each value. For example, if
floating-point data for the netCDF variable `Z' is known to be
accurate to only three significant digits, it would be appropriate
to use the variable attribute
-
- Z:C_format = "%.3g"
ncdump may also be used as a simple browser for netCDF
data files, to display the dimension names and sizes; variable
names, types, and shapes; attribute names and values; and
optionally, the values of data for all variables or selected
variables in a netCDF file.
ncdump uses `_' to represent data values that are equal
to the `_FillValue' attribute for a variable, intended to represent
data that has not yet been written. If a variable has no
`_FillValue' attribute, the default fill value for the variable
type is used if the variable is not of byte type.
OPTIONS
- -c
- Show the values of coordinate variables (variables that
are also dimensions) as well as the declarations of all dimensions,
variables, and attribute values. Data values of non-coordinate
variables are not included in the output. This is the most suitable
option to use for a brief look at the structure and contents of a
netCDF file.
- -h
- Show only the header information in the output, that is
the declarations of dimensions, variables, and attributes but no
data values for any variables. The output is identical to using the
-c option except that the values of coordinate variables are
not included. (At most one of -c or -h options may be
present.)
- -v var1,...,varn
- The output will include data values for the specified
variables, in addition to the declarations of all dimensions,
variables, and attributes. One or more variables must be specified
by name in the comma-delimited list following this option. The list
must be a single argument to the command, hence cannot contain
blanks or other white space characters. The named variables must be
valid netCDF variables in the input-file. The default, without this
option and in the absence of the -c or -h options, is
to include data values for all variables in the output.
- -b lang
- A brief annotation in the form of a CDL comment (text beginning
with the characters ``//'') will be included in the data section of
the output for each `row' of data, to help identify data values for
multidimensional variables. If lang begins with `C' or `c',
then C language conventions will be used (zero-based indices, last
dimension varying fastest). If lang begins with `F' or `f',
then Fortran language conventions will be used (one-based indices,
first dimension varying fastest). In either case, the data will be
presented in the same order; only the annotations will differ. This
option is useful for browsing through large volumes of
multidimensional data.
- -f lang
- Full annotations in the form of trailing CDL comments (text
beginning with the characters ``//'') for every data value (except
individual characters in character arrays) will be included in the
data section. If lang begins with `C' or `c', then C
language conventions will be used (zero-based indices, last
dimension varying fastest). If lang begins with `F' or `f',
then Fortran language conventions will be used (one-based indices,
first dimension varying fastest). In either case, the data will be
presented in the same order; only the annotations will differ. This
option may be useful for piping data into other filters, since each
data value appears on a separate line, fully identified.
- -l len
- Changes the default maximum line length (80) used in formatting
lists of non-character data values.
- -n name
- CDL requires a name for a netCDF data set, for use by ncgen
-b in generating a default netCDF file name. By default,
ncdump constructs this name from the last component of the
pathname of the input netCDF file by stripping off any extension it
has. Use the -n option to specify a different name. Although
the output file name used by ncgen -b can be specified, it
may be wise to have ncdump change the default name to avoid
inadvertantly overwriting a valuable netCDF file when using
ncdump, editing the resulting CDL file, and using ncgen
-b to generate a new netCDF file from the edited CDL file.
- -p float_digits[,double_digits]
- Specifies default precision (number of significant digits) to
use in displaying floating-point or double precision data values
for attributes and variables. If specified, this value overrides
the value of the `C_format' attribute for any variable that has
such an attribute. Floating-point data will be displayed with
float_digits significant digits. If double_digits is
also specified, double-precision values will be displayed with that
many significant digits. In the absence of any -p
specifications, floating-point and double-precision data are
displayed with 7 and 15 significant digits respectively. CDL files
can be made smaller if less precision is required. If both
floating-point and double-presision precisions are specified, the
two values must appear separated by a comma (no blanks) as a single
argument to the command. If you really want every last bit of
precision from the netCDF file represented in the CDL file for all
possible floating-point values, you will have to specify this with
-p 9,17 (according to Theorem 15 of the paper listed under
REFERENCES).
EXAMPLES
Look at the structure of the data in the netCDF file
`foo.nc':
-
- ncdump -c foo.nc
Produce an annotated CDL version of the structure and data in
the netCDF file `foo.nc', using C-style indexing for the
annotations:
-
- ncdump -b c foo.nc > foo.cdl
Output data for only the variables `uwind' and `vwind' from the
netCDF file `foo.nc', and show the floating-point data with
only three significant digits of precision:
-
- ncdump -v uwind,vwind -p 3 foo.nc
Produce a fully-annotated (one data value per line) listing of
the data for the variable `omega', using Fortran conventions for
indices, and changing the netCDF dataset name in the resulting CDL
file to `omega':
-
- ncdump -v omega -f fortran -n omega foo.nc >
Z.cdl
REFERENCES
What Every Computer Scientist should Know About
Floating-Point Arithmetic, D. Goldberg, ACM Computing
Surveys, Vol. 23, No. 1, March 1991, pp. 5-48.
SEE ALSO
ncgen(1),
(3)
BUGS
Character arrays that contain a null-byte are treated like C
strings, so no characters after the null byte appear in the output.
Multidimensional character string arrays are not handled well,
since the CDL syntax for breaking a long character string into
several shorter lines is weak.
There should be a way to specify that the data should be
displayed in `record' order, that is with the all the values for
`record' variables together that have the same value of the record
dimension.